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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12714178_12719027_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
12714178 - 12719027
Intron Length:
4850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGATC
5'SS Class:
strong_major
3'SS Sequence:
ACCTCTTGATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
TTTTTTTCCACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
79.3
34.3
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
66.6
0.37
1
66
39
Minor 5ss
36.2
-1.6
3.4
51.2
45.7
Minor BPS
55
0.14
2
73.67
37.7

Associated Gene:

Gene:
CAPN15
Ensembl Gene ID:
ENSAPLG00000003550
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003628
12686416 - 12723320
36905