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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12719174_12723138_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
12719174 - 12723138
Intron Length:
3965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGAGGC
5'SS Class:
major
3'SS Sequence:
TCTTTTGCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
CTTTTCCTATCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
60.3
39.3
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
86.3
0.82
0.8
84.6
30.3
Minor 5ss
24.9
-2.9
3.1
24.4
37.1
Minor BPS
54.6
0.14
2
71.36
41

Associated Gene:

Gene:
CAPN15
Ensembl Gene ID:
ENSAPLG00000003550
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003628
12686416 - 12723320
36905