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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12753685_12753980_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12753685 - 12753980
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
TGTCCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
GTGTCCTCACAG
Flanking Amino Acid:
VPLSDLRWLRVGPKILQYVV
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
82.9
0.74
0.8
76.8
31.7
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
47
-0.3
2
53.83
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004058
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027540
12745253 - 12754365
9113
ENSAPLT00000004152
12745253 - 12754365
9113