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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12754059_12754148_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12754059 - 12754148
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTGAGTCGG
5'SS Class:
major
3'SS Sequence:
TCCTTTGCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCTCACCCACCC
Flanking Amino Acid:
GRGVSLLGYLQTRPHGDVLG
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.3
50.9
47.3
Major BPS
72.7
0.56
1
75
30.1
Major PPT
81.3
0.7
0.8
76.3
32.3
Minor 5ss
30
-2.3
2.8
36.9
40.4
Minor BPS
40.6
-0.7
2.1
54.17
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004058
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004152
12745253 - 12754365
9113