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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12756599_12758286_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12756599 - 12758286
Intron Length:
1688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTGA
5'SS Class:
major
3'SS Sequence:
TTTGTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
GTATACAAAATA
Flanking Amino Acid:
DAVLGFHVLQGYLKGALEKW
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
61.2
39.9
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
89.5
0.89
0.7
85
29.8
Minor 5ss
42.3
-0.9
3.1
56.3
47.9
Minor BPS
45.7
-0.3
2
59.22
40.2

Associated Gene:

Gene:
C16orf89
Ensembl Gene ID:
ENSAPLG00000004102
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018562
12756427 - 12762308
5882