About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12756604_12758849_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12756604 - 12758849
Intron Length:
2246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGACACAG
5'SS Class:
weak_major
3'SS Sequence:
CCACTAATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TCTCCTTTGACT
Flanking Amino Acid:
VLGFHVLQGIALFFDLISEF
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51
0.02
1.2
44.3
39
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
69.6
0.44
0.9
61.7
37.6
Minor 5ss
34
-1.8
3.2
44.8
44.2
Minor BPS
74.6
0.86
1.2
84.49
36.3

Associated Gene:

Gene:
C16orf89
Ensembl Gene ID:
ENSAPLG00000004102
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023891
12756427 - 12762061
5635