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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12759026_12759201_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12759026 - 12759201
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TATTCTTAAACA
Flanking Amino Acid:
DTCYTYLLGTWKENGKSCVV
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.7
32.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
74
0.54
1
70.6
38.8
Minor 5ss
53.6
0.12
2.3
66.5
39.1
Minor BPS
71.7
0.68
1.6
80.29
35.7

Associated Gene:

Gene:
C16orf89
Ensembl Gene ID:
ENSAPLG00000004102
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018562
12756427 - 12762308
5882