Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12759320_12760757_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12759320 - 12760757

Intron Length:

1438

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTCTGTATCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTCAA

U12 Branch Point Sequence:

TTTTCTGTATCT

Flanking Amino Acid:

QLFYFMFADMKGCSDHLFLR

Intron Amino Acid Position:

215

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.8

79.4

28.8

Major BPS

67.8

0.44

1.1

69.6

37.5

Major PPT

76.9

0.61

0.9

70.2

40.4

Minor 5ss

32.1

-2

3.1

36.8

41.9

Minor BPS

60.5

0.41

2.2

87.39

38.7

Associated Gene:

Gene:

C16orf89

Ensembl Gene ID:

ENSAPLG00000004102

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004201

12752498 - 12762061

9564

ENSAPLT00000023891

12756427 - 12762061

5635

ENSAPLT00000018562

12756427 - 12762308

5882