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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12761426_12761969_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12761426 - 12761969
Intron Length:
544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTAAG
5'SS Class:
major
3'SS Sequence:
CTTCTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAA
U12 Branch Point Sequence:
AAAACCTTACAC
Flanking Amino Acid:
KPKEGCFGEPSEDFEYSAGT
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
68.1
38.6
Major BPS
47.9
-0.1
0.9
51.7
28.4
Major PPT
86.9
0.83
0.7
84.8
22.9
Minor 5ss
31.8
-2.1
2.7
39
40.2
Minor BPS
49.4
-0
1.7
57.53
40.2

Associated Gene:

Gene:
C16orf89
Ensembl Gene ID:
ENSAPLG00000004102
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004201
12752498 - 12762061
9564
ENSAPLT00000023891
12756427 - 12762061
5635
ENSAPLT00000018562
12756427 - 12762308
5882