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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1276457_1277700_R

Intron Information:

Intron Rank:
35
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1276457 - 1277700
Intron Length:
1244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGTATAGC
5'SS Class:
weak_major
3'SS Sequence:
GATGGCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCAGAT
U12 Branch Point Sequence:
TTTTCCCCATCC
Flanking Amino Acid:
YLPQLDSHMIVHHSRSNPTD
Intron Amino Acid Position:
1539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.9
0.14
1
53.7
37.3
Major BPS
65.3
0.38
1
60.7
37.6
Major PPT
65.2
0.34
1
54.2
45.5
Minor 5ss
37.9
-1.4
2.8
45.8
37.9
Minor BPS
53.3
0.08
2.1
75.79
40.3

Associated Gene:

Gene:
TSC2
Ensembl Gene ID:
ENSAPLG00000007194
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020598
1275841 - 1311261
35421