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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1276469_1276742_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1276469 - 1276742
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCAAATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAA
U12 Branch Point Sequence:
TTTTCCCCATCC
Flanking Amino Acid:
VARQMALHANMASQVHHSRS
Intron Amino Acid Position:
1605

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
77
31.3
Major BPS
63.1
0.33
1.2
72.7
34.3
Major PPT
65.7
0.35
1
64.3
35.5
Minor 5ss
34
-1.8
2.7
42.8
36.9
Minor BPS
53.3
0.08
2.1
75.79
40.3

Associated Gene:

Gene:
TSC2
Ensembl Gene ID:
ENSAPLG00000007194
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023658
1275841 - 1314143
38303
ENSAPLT00000023056
1275841 - 1311261
35421
ENSAPLT00000007609
1275841 - 1311261
35421