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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12767993_12768101_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12767993 - 12768101
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAAACC
5'SS Class:
major
3'SS Sequence:
ATTTCCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TGATGTTTTACT
Flanking Amino Acid:
ASVLRGAPHEIVVEILEGES
Intron Amino Acid Position:
535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
66
38
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
83.8
0.76
0.7
82
29.1
Minor 5ss
33
-1.9
3.2
44.5
43
Minor BPS
51.9
0.14
2.1
73.34
43.3

Associated Gene:

Gene:
SEC14L5
Ensembl Gene ID:
ENSAPLG00000004578
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004738
12765309 - 12800780
35472