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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1276835_1277548_R

Intron Information:

Intron Rank:
36
Intron Class:
major_hybrid
Intron Phase:
1
Intron Coordinates:
1276835 - 1277548
Intron Length:
714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTAAAAAATGAAG|A
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
CTTTCTTTAAAA
Flanking Amino Acid:
CNLVTLQCRKDMEGLVDTSV
Intron Amino Acid Position:
1574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
79
35.3
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
49.8
-0
1.2
47.8
42.9
Minor 5ss
36.6
-1.5
3.3
51.4
45.5
Minor BPS
75.7
0.8
1.3
80.33
35.6

Associated Gene:

Gene:
TSC2
Ensembl Gene ID:
ENSAPLG00000007194
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023658
1275841 - 1314143
38303
ENSAPLT00000023056
1275841 - 1311261
35421
ENSAPLT00000007609
1275841 - 1311261
35421