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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12768770_12769409_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12768770 - 12769409
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
GTCTGCTTACTG
Flanking Amino Acid:
PRVFPVLWTLVSPFINENTR
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
28.7
Major BPS
68.7
0.46
1
71.3
34
Major PPT
76
0.59
0.9
70.1
35.1
Minor 5ss
26.7
-2.7
3
27.8
37.9
Minor BPS
48.2
-0.2
2.1
55.32
46.4

Associated Gene:

Gene:
SEC14L5
Ensembl Gene ID:
ENSAPLG00000004578
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004738
12765309 - 12800780
35472