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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12770354_12770893_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12770354 - 12770893
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTGTCTTTAATT
Flanking Amino Acid:
ALGEESLLRHVLSINEEGQK
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
77.2
31.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
84.8
0.78
0.8
82.3
33
Minor 5ss
43
-0.8
3.1
62.5
41.8
Minor BPS
76.9
0.92
1.2
83.09
39.1

Associated Gene:

Gene:
SEC14L5
Ensembl Gene ID:
ENSAPLG00000004578
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004738
12765309 - 12800780
35472