About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12770983_12771631_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12770983 - 12771631
Intron Length:
649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGAAGC
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAC
Flanking Amino Acid:
YTGGWHYQDRDGRPLYILRL
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.2
63.7
40.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.7
0.56
1.1
75.2
38.8
Minor 5ss
36.3
-1.6
2.7
44.5
43
Minor BPS
70.6
0.62
1.3
75.99
33.7

Associated Gene:

Gene:
SEC14L5
Ensembl Gene ID:
ENSAPLG00000004578
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004738
12765309 - 12800780
35472