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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12771822_12779114_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12771822 - 12779114
Intron Length:
7293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TGATCCTTACAA
Flanking Amino Acid:
QWLQETHKGKIPKDEHILRF
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.5
38.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
89
0.88
0.6
88.2
21.5
Minor 5ss
25.2
-2.8
3.2
31.3
42.9
Minor BPS
61.5
0.36
1.7
70.67
40.9

Associated Gene:

Gene:
SEC14L5
Ensembl Gene ID:
ENSAPLG00000004578
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004738
12765309 - 12800780
35472