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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1277628_1277841_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1277628 - 1277841
Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAGAT
5'SS Class:
major
3'SS Sequence:
GTTTTCCCGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
ACGTATTTGACT
Flanking Amino Acid:
GEDFKLGTIKGQFNFVHVII
Intron Amino Acid Position:
1548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
68.6
36.4
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
71.1
0.48
0.9
71
36
Minor 5ss
30.4
-2.2
3.7
46.7
48.6
Minor BPS
58.1
0.34
1.5
69.73
41.6

Associated Gene:

Gene:
TSC2
Ensembl Gene ID:
ENSAPLG00000007194
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023658
1275841 - 1314143
38303
ENSAPLT00000023056
1275841 - 1311261
35421
ENSAPLT00000007609
1275841 - 1311261
35421