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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12782007_12783758_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12782007 - 12783758
Intron Length:
1752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TCTTTGGGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCATAT
U12 Branch Point Sequence:
TGCCATCCAACC
Flanking Amino Acid:
VVVLETCSYSVHPENEEWTC
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.5
38.3
Major BPS
59
0.23
1.2
55
42.7
Major PPT
70.6
0.46
1
69.2
41.8
Minor 5ss
36.1
-1.6
3.2
50.7
39.7
Minor BPS
41.8
-0.6
1.9
50.86
39.3

Associated Gene:

Gene:
SEC14L5
Ensembl Gene ID:
ENSAPLG00000004578
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004738
12765309 - 12800780
35472