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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12783891_12784004_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12783891 - 12784004
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TCATCCTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CATTTTTTAAAT
Flanking Amino Acid:
NVDAPRLLKKIAGVEYVFFI
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.4
1.12
0.8
76.1
39.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.9
0.65
0.8
76.7
31.6
Minor 5ss
29.2
-2.4
3.8
40.8
45.4
Minor BPS
67.5
0.63
1.4
77.65
38.8

Associated Gene:

Gene:
SEC14L5
Ensembl Gene ID:
ENSAPLG00000004578
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004738
12765309 - 12800780
35472