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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12784155_12798683_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12784155 - 12798683
Intron Length:
14529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTTCACTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ACGGTTTTCACT
Flanking Amino Acid:
YKYPFELVMAAYEKRFPTCP
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
71.6
33.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
86.7
0.83
0.7
78.3
35.2
Minor 5ss
32.8
-2
2.7
42.3
38.4
Minor BPS
47.4
-0.1
1.8
60.51
44.2

Associated Gene:

Gene:
SEC14L5
Ensembl Gene ID:
ENSAPLG00000004578
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004738
12765309 - 12800780
35472