About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1279244_1279496_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1279244 - 1279496
Intron Length:
253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TTAACATTCATT
Flanking Amino Acid:
IAVLYVGEGQSNNEIAILSN
Intron Amino Acid Position:
1439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
83.9
0.76
0.8
76.9
37.3
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
50.6
0.1
2.1
74.97
41.6

Associated Gene:

Gene:
TSC2
Ensembl Gene ID:
ENSAPLG00000007194
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023056
1275841 - 1311261
35421
ENSAPLT00000020598
1275841 - 1311261
35421
ENSAPLT00000007609
1275841 - 1311261
35421
ENSAPLT00000029382
1273205 - 1311261
38057
ENSAPLT00000023658
1275841 - 1314143
38303