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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12814069_12815374_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12814069 - 12815374
Intron Length:
1306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCACG
5'SS Class:
major
3'SS Sequence:
CTTACATTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TAACCCTTCACT
Flanking Amino Acid:
LLAPILSNKDASPCDRDQCL
Intron Amino Acid Position:
672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.6
44.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
80
0.68
0.9
73.4
35.8
Minor 5ss
40.2
-1.1
2.8
51.1
45
Minor BPS
65.4
0.57
1.8
80.03
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004922
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019032
12813111 - 12851318
38208
ENSAPLT00000017203
12813111 - 12852338
39228
ENSAPLT00000005084
12813111 - 12843997
30887