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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12815506_12816450_R

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12815506 - 12816450
Intron Length:
945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGAT
5'SS Class:
strong_major
3'SS Sequence:
CCATATTTATAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
CTTTCCATATTT
Flanking Amino Acid:
STPSHLPDEKRANSETEEDK
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.1
35.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
59.8
0.22
1.1
64.5
40
Minor 5ss
30.7
-2.2
3.7
46.1
49.1
Minor BPS
59.8
0.39
1.9
80.67
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004922
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019032
12813111 - 12851318
38208
ENSAPLT00000017203
12813111 - 12852338
39228
ENSAPLT00000005084
12813111 - 12843997
30887