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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12816501_12817678_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12816501 - 12817678
Intron Length:
1178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGTAC
5'SS Class:
major
3'SS Sequence:
TCTTTTATGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATG
Flanking Amino Acid:
CNRKLLLFVQNVHKVLSTPS
Intron Amino Acid Position:
612

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
68
33
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
79.7
0.67
1
77.4
35.5
Minor 5ss
31.6
-2.1
3.2
40.7
45.8
Minor BPS
68.5
0.44
1.6
74.98
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004922
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019032
12813111 - 12851318
38208
ENSAPLT00000017203
12813111 - 12852338
39228
ENSAPLT00000005084
12813111 - 12843997
30887