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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12817796_12818108_R

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12817796 - 12818108
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
GGCCATGTCTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCATCAT
U12 Branch Point Sequence:
TCCTTTCTATTC
Flanking Amino Acid:
KKAKHVAEIEEDILELKRQL
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.7
39
Major BPS
75.6
0.64
1.1
76.2
37.5
Major PPT
57.7
0.17
1
53.5
41.2
Minor 5ss
30.1
-2.3
3.2
38.5
46.5
Minor BPS
45.3
-0.3
1.8
53.34
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004922
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017203
12813111 - 12852338
39228
ENSAPLT00000005084
12813111 - 12843997
30887
ENSAPLT00000019032
12813111 - 12851318
38208