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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12818298_12818523_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12818298 - 12818523
Intron Length:
226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCACTGCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCACCGCAACT
Flanking Amino Acid:
MEDELQRLNQKALGFLSENR
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.1
76.2
32.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
74.9
0.56
0.9
65.3
40.9
Minor 5ss
29.3
-2.4
2.9
33.7
41.5
Minor BPS
51.1
0.11
2.3
76.97
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004922
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005084
12813111 - 12843997
30887
ENSAPLT00000019032
12813111 - 12851318
38208
ENSAPLT00000017203
12813111 - 12852338
39228