Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12819184_12819786_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12819184 - 12819786

Intron Length:

603

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGTCGG

5'SS Class:

major

3'SS Sequence:

TTCTGCCCCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAC

U12 Branch Point Sequence:

GTGGTGTTAACG

Flanking Amino Acid:

LLDTSAFHSPTLDSLSCNGS

Intron Amino Acid Position:

457

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

46.2

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

75.5

0.57

0.8

68.9

31.7

Minor 5ss

28.7

-2.4

2.8

33.1

41.8

Minor BPS

47.9

-0.3

2.2

55.01

46.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004922

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005084

12813111 - 12843997

30887

ENSAPLT00000019032

12813111 - 12851318

38208

ENSAPLT00000017203

12813111 - 12852338

39228