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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12825365_12826973_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12825365 - 12826973
Intron Length:
1609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCTGA
5'SS Class:
major
3'SS Sequence:
CTTCTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTAGAT
U12 Branch Point Sequence:
TCTGCTTAGATT
Flanking Amino Acid:
RLKVHVRSPENRHENHFPVP
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
65.9
42.7
Major BPS
66.8
0.42
1.1
64.4
41.8
Major PPT
86.8
0.83
0.7
80.5
31.5
Minor 5ss
41.8
-0.9
3.2
55.7
48.5
Minor BPS
50.7
0.1
1.8
69.68
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004922
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005084
12813111 - 12843997
30887
ENSAPLT00000019032
12813111 - 12851318
38208
ENSAPLT00000017203
12813111 - 12852338
39228