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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12827128_12827546_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12827128 - 12827546
Intron Length:
419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCGTG
5'SS Class:
major
3'SS Sequence:
TTGTTCATTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTGTTCATT
Flanking Amino Acid:
ARKIITKAKFRHEGNTEVAF
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
67.1
44.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.9
0.52
1.1
76.9
36.3
Minor 5ss
38.6
-1.3
3.7
54.5
49.7
Minor BPS
48.9
-0
2.4
75.74
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004922
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019032
12813111 - 12851318
38208
ENSAPLT00000017203
12813111 - 12852338
39228
ENSAPLT00000005084
12813111 - 12843997
30887