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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12831305_12837639_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12831305 - 12837639
Intron Length:
6335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
AGCTGCTGACCA
Flanking Amino Acid:
RLLIARDDDARREFSELLEK
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
92.2
0.95
0.6
84.9
29.9
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
44.9
-0.3
2.1
55.19
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004922
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019032
12813111 - 12851318
38208
ENSAPLT00000017203
12813111 - 12852338
39228
ENSAPLT00000005084
12813111 - 12843997
30887