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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12837715_12838105_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12837715 - 12838105
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCGTAT
5'SS Class:
major
3'SS Sequence:
CCTTGTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGACAC
U12 Branch Point Sequence:
TTGGCGTTGACA
Flanking Amino Acid:
GDSLIGVTSERAVDILRTAS
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.2
66.7
41.3
Major BPS
57.7
0.19
1.2
66.7
40
Major PPT
79.5
0.66
0.8
73
31.9
Minor 5ss
42.9
-0.8
3.5
64.2
47.3
Minor BPS
53.9
0.12
2.2
69.88
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004922
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005084
12813111 - 12843997
30887
ENSAPLT00000019032
12813111 - 12851318
38208
ENSAPLT00000017203
12813111 - 12852338
39228