Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12872082_12872756_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12872082 - 12872756

Intron Length:

675

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTGAGTACT

5'SS Class:

strong_major

3'SS Sequence:

TCCCCCATGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCCAC

U12 Branch Point Sequence:

TCTTTCCCACGT

Flanking Amino Acid:

QLELLLRELDDQEKALDKYD

Intron Amino Acid Position:

134

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

82.6

29.4

Major BPS

62.4

0.31

1.2

72.4

34.6

Major PPT

65.2

0.34

57.9

37.2

Minor 5ss

35.4

-1.7

2.9

48.5

40.3

Minor BPS

-0.5

2.2

63.92

46.5

Associated Gene:

Gene:

PPL

Ensembl Gene ID:

ENSAPLG00000004977

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005165

12869678 - 12883516

13839