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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12873532_12873779_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12873532 - 12873779
Intron Length:
248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTACGTGCA
5'SS Class:
major
3'SS Sequence:
TCCCACTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TCCCACTTCACA
Flanking Amino Acid:
PDPEVVALADQIADSFVSVK
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.1
60.2
39
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
74
0.54
0.8
67.4
32.1
Minor 5ss
34.1
-1.8
3.4
46.4
43
Minor BPS
49.3
-0
2
61.46
44.5

Associated Gene:

Gene:
PPL
Ensembl Gene ID:
ENSAPLG00000004977
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005165
12869678 - 12883516
13839