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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12873878_12874462_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12873878 - 12874462
Intron Length:
585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGCTC
5'SS Class:
major
3'SS Sequence:
TCTCCTCACCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TTCTCCTCACCC
Flanking Amino Acid:
YEGLKADSIGDAASVQGRQL
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
63.9
42.4
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
73.3
0.52
0.9
65.7
35
Minor 5ss
28.5
-2.5
3.6
40.5
46
Minor BPS
61.8
0.35
1.9
74.59
42.4

Associated Gene:

Gene:
PPL
Ensembl Gene ID:
ENSAPLG00000004977
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005165
12869678 - 12883516
13839