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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12874621_12875374_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12874621 - 12875374
Intron Length:
754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAG
U12 Branch Point Sequence:
GTTGCTACAAAG
Flanking Amino Acid:
DSTERSKDLKNITNEVRRIE
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
66
38.4
Major BPS
48.2
-0.1
1.5
59.2
35.9
Major PPT
86.6
0.82
0.7
81.4
23.5
Minor 5ss
36.9
-1.5
3.3
50.4
46.2
Minor BPS
43.3
-0.6
2
50.72
43.1

Associated Gene:

Gene:
PPL
Ensembl Gene ID:
ENSAPLG00000004977
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005165
12869678 - 12883516
13839