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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12877575_12877871_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12877575 - 12877871
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAATTCTT
5'SS Class:
major
3'SS Sequence:
CCACACATCCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TTCCCTCTGACA
Flanking Amino Acid:
QVEVKLKNQVALLGDIASKE
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.4
38.8
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
57
0.16
0.9
47.1
34.7
Minor 5ss
40.4
-1.1
3.1
56.3
42.2
Minor BPS
55.3
0.16
1.7
68.61
37.6

Associated Gene:

Gene:
PPL
Ensembl Gene ID:
ENSAPLG00000004977
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005165
12869678 - 12883516
13839