Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12879300_12879935_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

12879300 - 12879935

Intron Length:

636

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTGAG

5'SS Class:

strong_major

3'SS Sequence:

CCCCCAACAACAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TATTAAC

U12 Branch Point Sequence:

GTAATATTAACT

Flanking Amino Acid:

LEFAQNLLRQQPDAQVTQEF

Intron Amino Acid Position:

638

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

1.1

72.3

39.5

Major BPS

81.9

0.79

0.8

81.9

Major PPT

58.1

0.18

0.9

51.2

Minor 5ss

37.6

-1.4

3.2

48.7

47.5

Minor BPS

60.5

0.41

1.6

75.78

Associated Gene:

Gene:

PPL

Ensembl Gene ID:

ENSAPLG00000004977

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005165

12869678 - 12883516

13839