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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12886852_12889371_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12886852 - 12889371
Intron Length:
2520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTGT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTGGTTTTATTT
Flanking Amino Acid:
LSTHLPQSLPDASQLHGKGS
Intron Amino Acid Position:
1119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.1
78.8
38.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
90.9
0.92
0.7
89.2
27.2
Minor 5ss
47.5
-0.2
2.6
67.8
43
Minor BPS
53.1
0.18
1.7
70.24
42.1

Associated Gene:

Gene:
UBN1
Ensembl Gene ID:
ENSAPLG00000005248
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024199
12886799 - 12908986
22188
ENSAPLT00000005467
12886799 - 12908986
22188
ENSAPLT00000048239
12886799 - 12908986
22188
ENSAPLT00000033159
12886799 - 12908986
22188