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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1288734_1290270_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1288734 - 1290270
Intron Length:
1537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GCTCACTTGATT
Flanking Amino Acid:
KPSLLQRSNTVASFSSMYQS
Intron Amino Acid Position:
1268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
89.5
0.89
0.6
84.5
23.1
Minor 5ss
26.7
-2.7
3.3
37.5
47.2
Minor BPS
57.3
0.31
1.5
70.44
40.5

Associated Gene:

Gene:
TSC2
Ensembl Gene ID:
ENSAPLG00000007194
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020598
1275841 - 1311261
35421
ENSAPLT00000007609
1275841 - 1311261
35421
ENSAPLT00000029382
1273205 - 1311261
38057