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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12889462_12889785_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12889462 - 12889785
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTGTA
5'SS Class:
major
3'SS Sequence:
TTTTTCTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
PGTFHHGLGHSLLAGLHSSP
Intron Amino Acid Position:
1089

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
71.6
33.7
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
88.3
0.86
0.6
82.1
30
Minor 5ss
33
-1.9
3.3
45.6
43.6
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
UBN1
Ensembl Gene ID:
ENSAPLG00000005248
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024199
12886799 - 12908986
22188
ENSAPLT00000005467
12886799 - 12908986
22188
ENSAPLT00000048239
12886799 - 12908986
22188
ENSAPLT00000033159
12886799 - 12908986
22188