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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12889852_12889923_R

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
12889852 - 12889923
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTATCT
5'SS Class:
major
3'SS Sequence:
TCCCCGAAAGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ATCTCCTTCACT
Flanking Amino Acid:
LPAALSSTPLGVSKDAIVTG
Intron Amino Acid Position:
978

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
69.7
35.1
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
57
0.16
1
51.7
35.7
Minor 5ss
46.7
-0.3
2.8
66.5
44.4
Minor BPS
73
0.8
1.7
86.17
40

Associated Gene:

Gene:
UBN1
Ensembl Gene ID:
ENSAPLG00000005248
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048239
12886799 - 12908986
22188
ENSAPLT00000033159
12886799 - 12908986
22188
ENSAPLT00000024199
12886799 - 12908986
22188