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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12892338_12892681_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12892338 - 12892681
Intron Length:
344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CGTATTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TCTGTTTTGACT
Flanking Amino Acid:
VIAPTKMKVKEPSCKPDKKI
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
23.3
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
74.6
0.55
1
65
45.5
Minor 5ss
37.4
-1.4
2.9
50.4
46
Minor BPS
65
0.55
1.4
77.64
39.7

Associated Gene:

Gene:
UBN1
Ensembl Gene ID:
ENSAPLG00000005248
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005467
12886799 - 12908986
22188
ENSAPLT00000048239
12886799 - 12908986
22188
ENSAPLT00000033159
12886799 - 12908986
22188
ENSAPLT00000024199
12886799 - 12908986
22188