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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12892725_12896823_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12892725 - 12896823
Intron Length:
4099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAA
U12 Branch Point Sequence:
TCTCCCTCAAAA
Flanking Amino Acid:
PLWPKGWMQARTKKKVIAPT
Intron Amino Acid Position:
563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74
38.4
Major BPS
60.8
0.27
1.1
63.2
34.1
Major PPT
63.6
0.31
1
59
34.7
Minor 5ss
33.3
-1.9
2.8
38.7
46.6
Minor BPS
60.7
0.33
1.7
70.84
40.8

Associated Gene:

Gene:
UBN1
Ensembl Gene ID:
ENSAPLG00000005248
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033159
12886799 - 12908986
22188