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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12898665_12898885_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12898665 - 12898885
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGATGTGCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
TGCTTTGTGATG
Flanking Amino Acid:
RARKLYLYEQGGRLKEPLQK
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
64.4
0.32
1
55
45.5
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
44.8
-0.5
2
49.37
39.6

Associated Gene:

Gene:
UBN1
Ensembl Gene ID:
ENSAPLG00000005248
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033159
12886799 - 12908986
22188
ENSAPLT00000024199
12886799 - 12908986
22188
ENSAPLT00000005467
12886799 - 12908986
22188
ENSAPLT00000048239
12886799 - 12908986
22188