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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12899016_12900318_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12899016 - 12900318
Intron Length:
1303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TCTTGTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTTAAT
U12 Branch Point Sequence:
CCCTGGTTAATG
Flanking Amino Acid:
FTQDINNIILDIELQTRELN
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.5
37.3
Major BPS
66.6
0.41
1.4
69.7
44.2
Major PPT
86.8
0.83
0.7
84.6
30.3
Minor 5ss
36.6
-1.5
3.3
47.2
42.3
Minor BPS
43.3
-0.6
2.4
45.75
47.6

Associated Gene:

Gene:
UBN1
Ensembl Gene ID:
ENSAPLG00000005248
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048239
12886799 - 12908986
22188
ENSAPLT00000033159
12886799 - 12908986
22188
ENSAPLT00000024199
12886799 - 12908986
22188
ENSAPLT00000005467
12886799 - 12908986
22188