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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12900390_12903040_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12900390 - 12903040
Intron Length:
2651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCAT
5'SS Class:
major
3'SS Sequence:
TGCTATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTGAA
U12 Branch Point Sequence:
TGTTTGCTATTT
Flanking Amino Acid:
LEKRIKELAQAARAAEGEGK
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
63.1
42.9
Major BPS
63.3
0.33
1.2
55.1
42.1
Major PPT
81.4
0.71
0.9
72.8
42
Minor 5ss
30.7
-2.2
3.6
46.8
48.5
Minor BPS
43.8
-0.3
2.4
68.65
42.7

Associated Gene:

Gene:
UBN1
Ensembl Gene ID:
ENSAPLG00000005248
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033159
12886799 - 12908986
22188
ENSAPLT00000024199
12886799 - 12908986
22188
ENSAPLT00000005467
12886799 - 12908986
22188
ENSAPLT00000048239
12886799 - 12908986
22188