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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12906173_12906464_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12906173 - 12906464
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
CTCTCATTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTCTCTCTCATT
Flanking Amino Acid:
SDSFIDNSEAYDELVPASLT
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
74.6
35.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
81.6
0.71
0.8
72.9
36.3
Minor 5ss
35.1
-1.7
2.8
49.5
40.3
Minor BPS
51.2
0.12
2.1
75.83
41.7

Associated Gene:

Gene:
UBN1
Ensembl Gene ID:
ENSAPLG00000005248
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048239
12886799 - 12908986
22188
ENSAPLT00000033159
12886799 - 12908986
22188
ENSAPLT00000024199
12886799 - 12908986
22188
ENSAPLT00000005467
12886799 - 12908986
22188