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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12906561_12907073_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12906561 - 12907073
Intron Length:
513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTACGTTCC
5'SS Class:
major
3'SS Sequence:
TCTTATTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
ATGAGCTTACCA
Flanking Amino Acid:
ALARKFEEKYGGKRRRKDRI
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.1
69
36.8
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
77.7
0.62
0.9
77.1
36.8
Minor 5ss
42.8
-0.8
3
57.9
39.9
Minor BPS
48.7
-0.1
2.1
62.21
44

Associated Gene:

Gene:
UBN1
Ensembl Gene ID:
ENSAPLG00000005248
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033159
12886799 - 12908986
22188
ENSAPLT00000024199
12886799 - 12908986
22188
ENSAPLT00000005467
12886799 - 12908986
22188
ENSAPLT00000048239
12886799 - 12908986
22188