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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1291147_1291601_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1291147 - 1291601
Intron Length:
455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATTCC
5'SS Class:
major
3'SS Sequence:
CTTGTCTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTGTGCTTGTCT
Flanking Amino Acid:
SSRNRVRSMSGGHALRVGAL
Intron Amino Acid Position:
1122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
70.9
33.7
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
71.2
0.48
1
65.7
41
Minor 5ss
41
-1
2.8
50.5
41.2
Minor BPS
44.3
-0.3
3.7
78.7
44.1

Associated Gene:

Gene:
TSC2
Ensembl Gene ID:
ENSAPLG00000007194
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020598
1275841 - 1311261
35421
ENSAPLT00000029382
1273205 - 1311261
38057
ENSAPLT00000007609
1275841 - 1311261
35421
ENSAPLT00000026815
1287238 - 1311261
24024
ENSAPLT00000023658
1275841 - 1314143
38303
ENSAPLT00000023056
1275841 - 1311261
35421